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ASM83254v1

Organism name:
Pedobacter lusitanus (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NL19
BioSample:
SAMN03291000
BioProject:
PRJNA273375
Submitter:
University of Aveiro
Date:
2015/02/05
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000832545.1 (latest)
RefSeq assembly accession:
GCF_000832545.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JXRA01
Assembly method:
CLC NGS Cell v. 7.0.3
Expected final version:
no
Genome coverage:
128.0x
Sequencing technology:
IonTorrent

IDs: 250171 [UID] 1513678 [GenBank] 1516768 [RefSeq]

See Genome Information for Pedobacter lusitanus

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/23/2015 14:47:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.9 (rev. 456657)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::5,273
CDS::4,601
Pseudo Genes::613
rRNAs::6 ( 5S, 16S, 23S )
tRNAs::52
ncRNA::1
Frameshifted Genes::199
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,988,187
Total ungapped length5,988,187
Number of contigs201
Contig N5057,420
Contig L5033
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)201

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,988,1872015,988,18757,42000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pedobacter lusitanusPedobacter lusitanus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_040026395.1Pedobacter lusitanustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_040026395.1Pedobacter lusitanustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9899.5698.54
Best-match type99.9899.5698.54

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna