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Clostridium polynesiense str. MS1

Organism name:
Clostridium polynesiense (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: MS1
BioSample:
SAMEA2769924
BioProject:
PRJEB1957
Submitter:
ebi
Date:
2014/09/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000820705.1 (latest)
RefSeq assembly accession:
GCF_000820705.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CCXI01
Genome coverage:
37x

IDs: 244101 [UID] 1480458 [GenBank] 1500098 [RefSeq]

See Genome Information for Clostridium polynesiense

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,560,738
Total ungapped length3,560,738
Number of contigs161
Contig N5036,480
Contig L5028
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)161

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,560,7381613,560,73836,48000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridium polynesienseClostridium polynesiense

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900142075.1Clostridium amylolyticumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.7411.649.72

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected