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ASM76394v1

Organism name:
Sphingopyxis sp. MWB1 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MWB1
BioSample:
SAMN02999383
BioProject:
PRJNA258496
Submitter:
Korea Basic Science Institute
Date:
2014/10/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000763945.1 (latest)
RefSeq assembly accession:
GCF_000763945.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JQFJ01
Assembly method:
CLCbio genomics workbench v. 6.0
Expected final version:
yes
Genome coverage:
1046.38x
Sequencing technology:
Illumina

IDs: 215731 [UID] 1350348 [GenBank] 1360908 [RefSeq]

See Genome Information for Sphingopyxis sp. MWB1

History (Show revision history)

Comment

Global statistics

Total sequence length3,118,428
Total ungapped length3,118,428
Number of contigs5
Contig N502,542,167
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)5

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,118,42853,118,4282,542,16700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sphingopyxis sp. MWB1Sphingopyxis sp. MWB1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016734905.1Sphingopyxis luteasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.2032.5332.42

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna