U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Bifmin

Organism name:
Bifidobacterium minimum (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: LMG 11592
BioSample:
SAMN02673441
BioProject:
PRJNA239853
Submitter:
University of Parma
Date:
2014/08/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000741645.1 (latest)
RefSeq assembly accession:
GCF_000741645.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JGZD01
Assembly method:
Mira v. 4.0
Genome coverage:
232x
Sequencing technology:
Ion Torrent

IDs: 204411 [UID] 1189878 [GenBank] 1433378 [RefSeq]

See Genome Information for Bifidobacterium minimum

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria available from BCCM/LMG bacteria collection

Global statistics

Total sequence length1,892,860
Total ungapped length1,892,860
Number of contigs18
Contig N50236,969
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)18

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,892,860181,892,860236,96900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bifidobacterium minimumBifidobacterium minimum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000421685.1Bifidobacterium minimum DSM 20102type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000421685.1Bifidobacterium minimumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9898.5899.93
Best-match type99.9898.5899.93

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna