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Bifpse_sub.glo

Organism name:
Bifidobacterium pseudolongum subsp. globosum (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: LMG 11569
BioSample:
SAMN02673444
BioProject:
PRJNA239856
Submitter:
University of Parma
Date:
2014/08/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000741295.1 (latest)
RefSeq assembly accession:
GCF_000741295.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JGZG01
Assembly method:
Mira v. 4.0
Genome coverage:
152x
Sequencing technology:
Ion Torrent

IDs: 204231 [UID] 1189518 [GenBank] 1433198 [RefSeq]

See Genome Information for Bifidobacterium pseudolongum

There are 555 assemblies for this organism

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History (Show revision history)

Comment

Bacteria available from BCCM/LMG bacteria collection

Global statistics

Total sequence length1,935,255
Total ungapped length1,935,255
Number of contigs26
Contig N50183,461
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)26

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,935,255261,935,255183,46100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bifidobacterium pseudolongum subsp. globosumBifidobacterium pseudolongum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002706665.1Bifidobacterium pseudolongum subsp. globosum DSM 20092type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002706665.1Bifidobacterium pseudolongumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.7097.54
Best-match type99.9999.7097.54

ANI result

Taxonomy check statusBest match statusComment
OKsubspecies-matchna