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UoM_Shae.V3

Organism name:
Schistosoma haematobium (flatworms)
Sex:
pooled male and female
BioSample:
SAMN11431408
BioProject:
PRJNA78265
Submitter:
The University of Melbourne
Date:
2022/02/10
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000699445.3 (latest)
RefSeq assembly accession:
GCF_000699445.3 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AMPZ03
Assembly method:
Canu v. 1.9; Medaka v. 1.0.3; purge_haplotigs v. 1.1.1; Platanus-allee v. 2.0.2; HiRise v. 2.0.5; pilon v. 1.23; 3D-DNA v. 180922; Juicebox Assembly Tools v. 1.22; TGS-GapCloser v. 1.0.3; HyPo v. 1.0.3
Expected final version:
yes
Genome coverage:
130.0x
Sequencing technology:
Illumina; Oxford Nanopore; PacBio; Hi-C

IDs: 12104361 [UID] 31741368 [GenBank] 36766808 [RefSeq]

See Genome Information for Schistosoma haematobium

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length400,271,889
Total ungapped length400,248,827
Gaps between scaffolds0
Number of scaffolds163
Scaffold N5048,328,128
Scaffold L503
Number of contigs208
Contig N5020,231,032
Contig L507
Total number of chromosomes and plasmids8
Number of component sequences (WGS or clone)163

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000699455.3)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome ZWCM039142.1=NC_067195.10
Chromosome 1CM039143.1=NC_067196.10
Chromosome 2CM039144.1=NC_067197.10
Chromosome 3CM039145.1=NC_067198.10
Chromosome 4CM039146.1=NC_067199.10
Chromosome 5CM039147.1=NC_067200.10
Chromosome 6CM039148.1=NC_067201.10
Chromosome 7CM039149.1=NC_067202.10
unplacedn/an/an/a155

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All400,271,889163400,248,82748,328,128450
Chromosome ZW89,168,492189,163,49289,168,492100
Chromosome 193,306,550193,304,55093,306,55040
Chromosome 247,367,863147,365,36347,367,86350
Chromosome 348,328,128148,323,27648,328,12860
Chromosome 446,771,736146,770,63646,771,73630
Chromosome 522,148,653122,144,65322,148,65380
Chromosome 625,509,538125,509,03825,509,53810
Chromosome 719,481,189119,478,17919,481,18970
unplaced8,189,7401558,189,64074,43110