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ASM63393v1

Organism name:
Ectothiorhodospira haloalkaliphila ATCC 51935 (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Culture-collection: ATCC:51935
Infraspecific name:
Strain: ATCC 51935
BioSample:
SAMN00118193
BioProject:
PRJNA62141
Submitter:
JGI
Date:
2014/04/21
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000633935.1 (latest)
RefSeq assembly accession:
GCF_000633935.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AJUE01
Assembly method:
Unknown program v. before 2011-05-02
Genome coverage:
Unknown
Sequencing technology:
454-GS-FLX-Titanium; Illumina GAII

IDs: 149421 [UID] 1009298 [GenBank] 1108938 [RefSeq]

See Genome Information for Ectothiorhodospira haloalkaliphila

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 402752
Source DNA and Organism available from Donald A. Bryant (dab14@psu.edu)
Source DNA available from Donald A. Bryant (dab14@psu.edu)
Organism available from Donald A. Bryant (dab14@psu.edu)
Contacts: Donald A. Bryant (dab14@psu.edu)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft ... assembly at JGI-PGF
Annotation by JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
country::Egypt
investigation_type::bacteria_archaea
isol_growth_condt::8593098
lat_lon::30.4166 30.333
project_name::Ectothiorhodospira haloalkaliphila Imhoff 51/7, ATCC 51935
sequencing_meth::WGS
ref_biomaterial::ATCC 51935
rel_to_oxygen::Facultative
trophic_level::Phototroph
GOLD Stamp ID::Gi06845
Current Finishing Status::Level 3: Improved-High-Quality Draft
Type Strain::Yes
Funding Program::DOE-CSP 2010
Gene Calling Method::Prodigal 1.4, GenePRIMP
Isolation Site::Wadi Natrun, Egypt
Cell Shape::Rod-shaped
Motility::Motile
Temperature Range::Mesophile
Salinity::Halophile
Gram Staining::Gram-
##MIGS-Data-END##

Global statistics

Total sequence length3,448,426
Total ungapped length3,445,226
Gaps between scaffolds0
Number of scaffolds4
Scaffold N501,813,775
Scaffold L501
Number of contigs36
Contig N50215,495
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)36

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,448,42643,445,2261,813,775320

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Ectothiorhodospira haloalkaliphila ATCC 51935Ectothiorhodospira haloalkaliphila

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_022227625.1Ectothiorhodospira variabilissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.7386.3087.10

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchassembly is type-material