U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



12864_draft

Organism name:
Sulfitobacter donghicola DSW-25 = KCTC 12864 = JCM 14565 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: JCM:14565; KCTC:12864
Infraspecific name:
Strain: KCTC 12864
BioSample:
SAMN02721581
BioProject:
PRJNA233443
Submitter:
Yonsei University
Date:
2014/04/08
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000622405.1 (latest)
RefSeq assembly accession:
GCF_000622405.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JASF01
Assembly method:
CLC Genomics Workbench v. 5.1
Expected final version:
no
Genome coverage:
720.0x
Sequencing technology:
Illumina

IDs: 142221 [UID] 994738 [GenBank] 1084088 [RefSeq]

See Genome Information for Sulfitobacter donghicola

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Source DNA available from: Jihyun F. Kim, Department of Systems Biology, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul 120-749, Republic of Korea
Bacteria available from: KCTC 12864
Annotation was added to the contigs in January 2015

Global statistics

Total sequence length3,540,159
Total ungapped length3,540,159
Number of contigs9
Contig N503,276,862
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)9

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,540,15993,540,1593,276,86200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sulfitobacter donghicola DSW-25 = KCTC 12864 = JCM 14565Sulfitobacter donghicola

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000712275.1Sulfitobacter donghicola DSW-25 = KCTC 12864 = JCM 14565type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000712275.1Sulfitobacter donghicolatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.1699.92
Best-match type99.9999.1699.92

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna