History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 401890
Source DNA and Organism available from Iain Anderson (IJAnderson@lbl.gov)
Source DNA available from Iain Anderson (IJAnderson@lbl.gov)
Organism available from Iain Anderson (IJAnderson@lbl.gov)
Contacts: Iain Anderson (IJAnderson@lbl.gov)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

##MIGS-Data-START##
assembly::ALLPATHS v. R37654
country::Japan
environment::Rice paddies; Soil; Host
investigation_type::bacteria_archaea
isol_growth_condt::16957124
lat_lon::38.25222 140.335602
project_name::Xylanibacter oryzae KB 3, DSM 17970
sequencing_meth::WGS
ref_biomaterial::DSM 17970, JCM 13648
biotic_relationship::Free living
rel_to_oxygen::Obligate anaerobe
GOLD Stamp ID::Gi04512
Current Finishing Status::Level 5: Non-contiguous Finished
Type Strain::Yes
Funding Program::DOE-CSP 2010
Gene Calling Method::Prodigal 1.4, GenePRIMP
Isolation Site::rice-plant residue in flooded anoxic rice-field soil in Yamagata, Japan
Cell Shape::Rod-shaped
Motility::Nonmotile
Sporulation::Nonsporulating
Temperature Range::Mesophile
Temperature Optimum::30
pH::5.7 - 6.2
Gram Staining::Gram-
Diseases::None
##MIGS-Data-END##

Global statistics