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ASM42950v1

Organism name:
Aliagarivorans taiwanensis DSM 22990 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:22990
Infraspecific name:
Strain: DSM 22990
BioSample:
SAMN02440618
BioProject:
PRJNA185545
Submitter:
DOE Joint Genome Institute
Date:
2013/07/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000429505.1 (latest)
RefSeq assembly accession:
GCF_000429505.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AUBZ01
Assembly method:
Unknown program v. before 2013-05-09
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 62041 [UID] 778548 [GenBank] 1114308 [RefSeq]

See Genome Information for Aliagarivorans taiwanensis

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1011965
Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)
Contacts: Nikos Kyrpides (nckyrpides@lbl.gov)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI
Annotation by JGI
The ... JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
country::Taiwan
environment::Marine; Aquatic
investigation_type::bacteria_archaea
isol_growth_condt::19567569
lat_lon::22.992847 120.160503
project_name::Aliagarivorans taiwanensis DSM 22990
sequencing_meth::WGS
ref_biomaterial::DSM 22990
rel_to_oxygen::Facultative
finishing_strategy::Level 1: Standard Draft
trophic_level::Heterotroph
GOLD Stamp ID::Gi11116
Type Strain::Yes
Funding Program::DOE-CSP 2012
Isolation Site::Sea water
Cell Shape::Rod-shaped
Motility::Motile
Temperature Range::Mesophile
Temperature Optimum::25-30 C
pH::7-9
Gram Staining::Gram-
Phenotypes::Non-Haemolytic
##MIGS-Data-END##

Global statistics

Total sequence length4,413,269
Total ungapped length4,411,909
Gaps between scaffolds0
Number of scaffolds80
Scaffold N50110,933
Scaffold L5014
Number of contigs83
Contig N50107,075
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)83

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,413,269804,411,909110,93330

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Aliagarivorans taiwanensis DSM 22990Aliagarivorans taiwanensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000429485.1Aliagarivorans marinustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.9884.4176.36

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected