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ASM42874v1

Organism name:
Veillonella magna DSM 19857 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:19857
Infraspecific name:
Strain: DSM 19857
BioSample:
SAMN02441545
BioProject:
PRJNA185243
Submitter:
DOE Joint Genome Institute
Date:
2013/09/05
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000428745.1 (latest)
RefSeq assembly accession:
GCF_000428745.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AUAN01
Assembly method:
Unknown program v. before 2013-03-11
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 61651 [UID] 778158 [GenBank] 1124358 [RefSeq]

See Genome Information for Veillonella magna

There are 7 assemblies for this organism

See more

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1008541
Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)
Contacts: Nikos Kyrpides (nckyrpides@lbl.gov)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI
Annotation by JGI
The ... JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
country::Germany
environment::Host
investigation_type::bacteria_archaea
project_name::Veillonella magna DSM 19857
sequencing_meth::WGS
ref_biomaterial::DSM 19857
finishing_strategy::Level 1: Standard Draft
GOLD Stamp ID::Gi12041
Type Strain::Yes
Funding Program::DOE-CSP 2012
Isolation Site::jejunal mucosa of healthy pig
Gram Staining::Gram-
##MIGS-Data-END##

Global statistics

Total sequence length2,203,313
Total ungapped length2,202,818
Gaps between scaffolds0
Number of scaffolds34
Scaffold N50136,617
Scaffold L504
Number of contigs37
Contig N50136,617
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)36

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,203,313342,202,818136,61730

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Veillonella magna DSM 19857Veillonella magna

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_008830375.1Veillonella seminalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.403.863.77

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected