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ASM42042v1

Organism name:
Schaalia vaccimaxillae DSM 15804 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:15804
Infraspecific name:
Strain: DSM 15804
BioSample:
SAMN02441246
BioProject:
PRJNA185522
Submitter:
DOE Joint Genome Institute
Date:
2013/07/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000420425.1 (latest)
RefSeq assembly accession:
GCF_000420425.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ATUX01
Assembly method:
Unknown program v. before 2013-03-11
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 39991 [UID] 728788 [GenBank] 846658 [RefSeq]

See Genome Information for Schaalia vaccimaxillae

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1010671
Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)
Contacts: Nikos Kyrpides (nckyrpides@lbl.gov)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI
Annotation by JGI
The ... JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
collection_date::1996
country::United Kingdom
environment::Host
investigation_type::bacteria_archaea
isol_growth_condt::12710633
lat_lon::52.708739 -2.75279
project_name::Actinomyces vaccimaxillae DSM 15804
sequencing_meth::WGS
ref_biomaterial::DSM 15804, CCUG 46091
rel_to_oxygen::Facultative
finishing_strategy::Level 1: Standard Draft
GOLD Stamp ID::Gi11091
Type Strain::Yes
Funding Program::DOE-CSP 2012
Isolation Site::Jaw lesion in adult cow
Isolation Comments::Isolated at the Veterinary Investigation Centre, Shrewsbury
Cell Shape::Rod-shaped
Motility::Nonmotile
Sporulation::Nonsporulating
Temperature Range::Mesophile
Gram Staining::Gram+
Phenotypes::Catalase negative
##MIGS-Data-END##

Global statistics

Total sequence length2,338,426
Total ungapped length2,338,426
Number of contigs13
Contig N50422,022
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)13

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,338,426132,338,426422,02200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Schaalia vaccimaxillae DSM 15804Schaalia vaccimaxillae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900128465.1Actinomyces bouchesdurhonensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.503.193.28

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected