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ASM37838v1

Organism name:
Paenibacillus daejeonensis DSM 15491 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:15491
Infraspecific name:
Strain: DSM 15491
BioSample:
SAMN02440993
BioProject:
PRJNA182395
Submitter:
DOE Joint Genome Institute
Date:
2013/04/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000378385.1 (latest)
RefSeq assembly accession:
GCF_000378385.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ARKE01
Assembly method:
Velvet v. 1.1.04; ALLPATHS v. r41043
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 639018 [UID] 604828 [GenBank] 639018 [RefSeq]

See Genome Information for Paenibacillus daejeonensis

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 406131
Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)
Contacts: Nikos Kyrpides (nckyrpides@lbl.gov)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by JGI-PGF ... and JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Paenibacillus daejeonensis DSM 15491
collection_date::Missing
lat_lon::36.355 127.385
depth::Missing
alt_elev::Missing
country::South Korea
num_replicons::Missing
ref_biomaterial::DSM 15491
biotic_relationship::Missing
rel_to_oxygen::Aerobe
isol_growth_condt::12508876
assembly::Velvet v. 1.1.04; ALLPATHS v. r41043
finishing_strategy::Missing
environment::Soil
trophic_level::Missing
sequencing_meth::WGS
GOLD Stamp ID::Gi11730
Type Strain::Yes
Funding Program::DOE-CSP 2012
Isolation Site::Soil
Cell Shape::Rod-shaped
Motility::Motile
Sporulation::Sporulating
pH::7.0-13.0
Gram Staining::Gram+
Phenotypes::Alkaliphile; Catalase positive
##MIGS-Data-END##

Global statistics

Total sequence length7,464,058
Total ungapped length7,456,872
Gaps between scaffolds0
Number of scaffolds36
Scaffold N50440,685
Scaffold L505
Number of contigs53
Contig N50287,028
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)53

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,464,058367,456,872440,685170

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Paenibacillus daejeonensis DSM 15491Paenibacillus daejeonensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003605435.1Paenibacillus pinisolitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.750.610.77

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected