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Caprub1_0

Organism name:
Capsella rubella (eudicots)
Infraspecific name:
Cultivar: Monte Gargano
BioSample:
SAMN02981483
BioProject:
PRJNA13878
Submitter:
DOE Joint Genome Institute
Date:
2013/04/23
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000375325.1 (latest)
RefSeq assembly accession:
GCF_000375325.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ANNY01
Assembly method:
ARACHNE v. 20071016_modified
Genome coverage:
22.35X
Sequencing technology:
ABI 3739; Roche 454FLX

IDs: 602278 [UID] 602278 [GenBank] 963418 [RefSeq]

See Genome Information for Capsella rubella

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length133,063,876
Total ungapped length129,749,171
Gaps between scaffolds0
Number of scaffolds773
Scaffold N5015,040,190
Scaffold L504
Number of contigs7,067
Contig N50134,357
Contig L50264
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)7,067

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced133,063,876773129,749,17115,040,1906,2940