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Acin_schi_CIP107287_V1

Organism name:
Acinetobacter schindleri CIP 107287 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CIP 107287
BioSample:
SAMN01828163
BioProject:
PRJNA183293
Submitter:
Broad Institute
Date:
2013/04/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000368625.1 (latest)
RefSeq assembly accession:
GCF_000368625.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
APPQ01
Assembly method:
allpaths v. R43388
Genome coverage:
79.0x
Sequencing technology:
Illumina

IDs: 669398 [UID] 596148 [GenBank] 669398 [RefSeq]

See Genome Information for Acinetobacter schindleri

There are 53 assemblies for this organism

See more

History (Show revision history)

Comment

Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length3,394,558
Total ungapped length3,358,322
Gaps between scaffolds0
Number of scaffolds18
Scaffold N50912,463
Scaffold L502
Number of contigs33
Contig N50547,262
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)33

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,394,558183,358,322912,463150

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acinetobacter schindleri CIP 107287Acinetobacter schindleri

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000369625.1Acinetobacter variabilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.9448.1146.42

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected