U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



CAIM_602T_1.0

Organism name:
Vibrio mimicus CAIM 602 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: CAIM<MEX>:602
Infraspecific name:
Strain: CAIM 602
BioSample:
SAMN02469605
BioProject:
PRJNA179483
Submitter:
CIAD, A.C.
Date:
2013/02/08
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000338875.1 (latest)
RefSeq assembly accession:
GCF_000338875.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AOMO01
Assembly method:
MIRA v. 3.1.0
Genome coverage:
20.0x
Sequencing technology:
IonTorrent

IDs: 540458 [UID] 538258 [GenBank] 540458 [RefSeq]

See Genome Information for Vibrio mimicus

There are 46 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length4,320,286
Total ungapped length4,320,286
Number of contigs120
Contig N50159,054
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)120

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,320,2861204,320,286159,05400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Vibrio mimicus CAIM 602Vibrio mimicus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900460385.1Vibrio mimicustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900460385.1Vibrio mimicustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9899.8497.08
Best-match type99.9899.8497.08

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna