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IDs: 521038 [UID] 517338 [GenBank] 521038 [RefSeq]
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ URL -- http://www.jgi.doe.gov JGI Project ID: 97967 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and ... Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-PGF and JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Name::GCF_000328685.1-RS_2024_05_02Annotation Date::05/02/2024 01:04:15Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.7Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::4,365CDSs (total)::4,296Genes (coding)::4,215CDSs (with protein)::4,215Genes (RNA)::69rRNAs::5, 4, 4 (5S, 16S, 23S)complete rRNAs::5, 4, 4 (5S, 16S, 23S)tRNAs::54ncRNAs::2Pseudo Genes (total)::81CDSs (without protein)::81Pseudo Genes (ambiguous residues)::0 of 81Pseudo Genes (frameshifted)::46 of 81Pseudo Genes (incomplete)::50 of 81Pseudo Genes (internal stop)::18 of 81Pseudo Genes (multiple problems)::30 of 81##Genome-Annotation-Data-END##
##MIGS-Data-START##investigation_type::bacteria_archaeaproject_name::Natronococcus occultus SP4, DSM 3396collection_date::Missinglat_lon::-1.944 36.252depth::Missingalt_elev::Missingcountry::Kenyaenvironment::Fresh water, Aquaticnum_replicons::Missingref_biomaterial::DSM 3396, ATCC 43101, CCM 3871, NCMB 2192biotic_relationship::Free livingtrophic_level::Heterotrophrel_to_oxygen::Aerobeisol_growth_condt::Missingsequencing_meth::WGSassembly::Newbler v. 2.3 (pre-release)finishing_strategy::MissingGOLD Stamp ID::Gi02931Current Finishing Status::Level 6: FinishedType Strain::YesGreengenes ID::674Funding Program::DOE-GEBA 2007Gene Calling Method::Prodigal 1.4, GenePRIMPIsolation Site::Soda lake Lake MagadiCell Shape::Coccus-shapedMotility::NonmotileTemperature Range::MesophileTemperature Optimum::37CSalinity::HalophilepH::9.5Gram Staining::Gram-Phenotypes::Alkaliphile##MIGS-Data-END##
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