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ASM31957v2

Organism name:
Spiribacter salinus M19-40 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: M19-40
BioSample:
SAMN02603230
BioProject:
PRJNA179191
Submitter:
Evolutionary Genomics Group, Universidad Miguel Hernandez, San Juan de Alicante, Spain
Date:
2013/05/24
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000319575.2 (latest)
RefSeq assembly accession:
GCF_000319575.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
MIRA v. 3.9.4
Genome coverage:
150X
Sequencing technology:
Illumina; PacBio

IDs: 707568 [UID] 693388 [GenBank] 707568 [RefSeq]

See Genome Information for Spiribacter salinus

There are 3 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000319575.2-RS_2024_05_02
Annotation Date::05/02/2024 00:55:31
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,745
CDSs (total)::1,693
Genes (coding)::1,686
CDSs (with protein)::1,686
Genes (RNA)::52
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::45
ncRNAs::4
Pseudo Genes (total)::7
CDSs (without protein)::7
Pseudo Genes (ambiguous residues)::0 of 7
Pseudo Genes (frameshifted)::1 of 7
Pseudo Genes (incomplete)::5 of 7
Pseudo Genes (internal stop)::2 of 7
Pseudo Genes (multiple problems)::1 of 7
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,739,487
Total ungapped length1,739,487
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000319585.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP005963.1=NC_021291.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,739,487

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Spiribacter salinus M19-40Spiribacter salinus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_007625215.1Spiribacter aquaticussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.5513.4111.72

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected