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ASM30025v2

Organism name:
Candidatus Methanomethylophilus alvi Mx1201 (archaea)
Taxonomy check:
OK
Infraspecific name:
Strain: Mx1201
BioSample:
SAMN03081445
BioProject:
PRJNA175948
Submitter:
Université d'Auvergne
Date:
2013/04/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000300255.2 (latest)
RefSeq assembly accession:
GCF_000300255.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.6
Sequencing technology:
454

IDs: 599268 [UID] 605048 [GenBank] 599268 [RefSeq]

See Genome Information for Methanomethylophilus alvi

There are 25 assemblies for this organism

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History (Show revision history)

Comment

Source DNA available from EA CIDAM 4678, Facultes de medecine-Pharmacie, Place Henri Dunant, F-63001 Clermont-Ferrand, France.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/03/2023 10:04:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,677
CDSs (total)::1,625
Genes (coding)::1,613
CDSs (with protein)::1,613
Genes (RNA)::52
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::46
ncRNAs::2
Pseudo Genes (total)::12
CDSs (without protein)::12
Pseudo Genes (ambiguous residues)::0 of 12
Pseudo Genes (frameshifted)::0 of 12
Pseudo Genes (incomplete)::4 of 12
Pseudo Genes (internal stop)::8 of 12
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,666,795
Total ungapped length1,666,795
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000300265.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP004049.1=NC_020913.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,666,795

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Methanomethylophilus alvi Mx1201Methanomethylophilus alvi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003711245.1Methanomethylophilus alvitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003711245.1Methanomethylophilus alvitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.99100.00100.00
Best-match type99.99100.00100.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna