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ASM29957v1

Organism name:
Oceaniovalibus guishaninsula JLT2003 (a-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: JLT2003
BioSample:
SAMN02471016
BioProject:
PRJNA171123
Submitter:
State Key Laboratory for Marine Environmental Science, Xiamen University
Date:
2012/09/27
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000299575.1 (latest)
RefSeq assembly accession:
GCF_000299575.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AMGO01
Assembly method:
Newbler v. 2.7
Genome coverage:
25.0x
Sequencing technology:
454

IDs: 439158 [UID] 427678 [GenBank] 439158 [RefSeq]

See Genome Information for Oceaniovalibus guishaninsula

History (Show revision history)

Comment

Bacteria and source DNA available from Kai Tang, State Key Laboratory for Marine Environmental Science, Xiamen University, Xiamen, FuJian 361005, P.R. China

Global statistics

Total sequence length2,897,133
Total ungapped length2,897,133
Number of contigs68
Contig N50203,628
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)68

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,897,133682,897,133203,62800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Oceaniovalibus guishaninsula JLT2003Oceaniovalibus guishaninsula

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_028553765.1Paracoccus stylophoraetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.8613.0610.39

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna