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ASM29621v2

Organism name:
Bradyrhizobium sp. CCGE-LA001 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CCGE-LA001
BioSample:
SAMN02469422
BioProject:
PRJNA172908
Submitter:
Dra. Esperanza Martínez Romero
Date:
2016/01/25
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000296215.2 (latest)
RefSeq assembly accession:
GCF_000296215.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT v. 2.3
Genome coverage:
243X
Sequencing technology:
PacBioHQ

IDs: 631871 [UID] 2835568 [GenBank] 2851098 [RefSeq]

See Genome Information for Bradyrhizobium sp. CCGE-LA001

History (Show revision history)

Comment

DNA is available from Dr. Esperanza Martinez-Romero, Center for Genomic Sciences, National Autonomous University of Mexico, Av. Universidad s/n Col. Chamilpa 62210 Cuernavaca, Morelos, Mexico.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP ... can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/03/2024 09:15:01
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,260
CDSs (total)::7,206
Genes (coding)::7,078
CDSs (with protein)::7,078
Genes (RNA)::54
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::47
ncRNAs::4
Pseudo Genes (total)::128
CDSs (without protein)::128
Pseudo Genes (ambiguous residues)::0 of 128
Pseudo Genes (frameshifted)::88 of 128
Pseudo Genes (incomplete)::72 of 128
Pseudo Genes (internal stop)::27 of 128
Pseudo Genes (multiple problems)::50 of 128
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,833,499
Total ungapped length7,833,499
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000296225.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP013949.1=NZ_CP013949.1

Assembly statistics

MoleculeTotal
Length
Chromosome 7,833,499

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bradyrhizobium sp. CCGE-LA001Bradyrhizobium sp. CCGE-LA001

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_021044685.1Bradyrhizobium daqingensetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.5777.8876.28

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna