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ASM28627v1

Organism name:
Enterobacter kobei (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ENHKU01
BioSample:
SAMN02603959
BioProject:
PRJNA170442
Submitter:
The University of Hong Kong
Date:
2012/08/10
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000286275.1 (latest)
RefSeq assembly accession:
GCF_000286275.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 416408 [UID] 410478 [GenBank] 416408 [RefSeq]

See Genome Information for Enterobacter kobei

There are 619 assemblies for this organism

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History (Show revision history)

Comment

Genome was manually curated based on annotation generated by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html.
Source DNA is available from Wing-Yee Liu of Clover Seed Co., Ltd (winnie@cloverseed.com.hk) / ... The University of Hong Kong (winnielh@hku.hk) or Prof. Frederick C. C. Leung, The University of Hong Kong (fcleung@hku.hk)
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
The organism was changed from "Enterobacter cloacae subsp. cloacae ENHKU01" to "Enterobacter kobei" in March 2019.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/03/2024 11:04:36
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,503
CDSs (total)::4,389
Genes (coding)::4,303
CDSs (with protein)::4,303
Genes (RNA)::114
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::82
ncRNAs::7
Pseudo Genes (total)::86
CDSs (without protein)::86
Pseudo Genes (ambiguous residues)::0 of 86
Pseudo Genes (frameshifted)::70 of 86
Pseudo Genes (incomplete)::21 of 86
Pseudo Genes (internal stop)::8 of 86
Pseudo Genes (multiple problems)::11 of 86
Pseudo Genes (short protein)::1 of 86
##Genome-Annotation-Data-END##

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##
This Genome (query)::GCA_000286275.1
Current Name::Enterobacter kobei
Previous Name::Enterobacter cloacae subsp. cloacae ENHKU01
Date Updated::2019-03-07
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_001729765.1
A1 Name::Enterobacter kobei
A1 ANI::99.19846%
A1 Query Coverage::90.52%
A1 Subject Coverage::86.83%
Analysis 2 (A2)::Query vs. TYPE genome for previous name
A2 Genome (subject)::GCA_000025565.1
A2 Name::Enterobacter cloacae subsp. cloacae ENHKU01
A2 ANI::88.36295%
A2 Query Coverage::84.77%
A2 Subject Coverage::71.56%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length4,726,582
Total ungapped length4,726,582
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000286285.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP003737.1=NC_018405.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,726,582

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter kobeiEnterobacter kobei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001729765.1Enterobacter kobeitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001729765.1Enterobacter kobeitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1990.5286.83
Best-match type99.1990.5286.83

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna