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IDs: 419488 [UID] 417628 [GenBank] 419488 [RefSeq]
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ URL -- http://www.jgi.doe.gov JGI Project ID: 4091036 Source DNA available from Alexander Loy (loy@microbial-ecology.net) Organism available from DSMZ: DSM 13257 Contacts: Alexander Loy (loy@microbial-ecology.net) ... Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Name::GCF_000231385.2-RS_2024_05_13Annotation Date::05/13/2024 01:06:01Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.7Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::4,576CDSs (total)::4,459Genes (coding)::4,397CDSs (with protein)::4,397Genes (RNA)::117rRNAs::10, 11, 10 (5S, 16S, 23S)complete rRNAs::10, 11, 10 (5S, 16S, 23S)tRNAs::81ncRNAs::5Pseudo Genes (total)::62CDSs (without protein)::62Pseudo Genes (ambiguous residues)::0 of 62Pseudo Genes (frameshifted)::24 of 62Pseudo Genes (incomplete)::46 of 62Pseudo Genes (internal stop)::13 of 62Pseudo Genes (multiple problems)::19 of 62##Genome-Annotation-Data-END##
##MIGS-Data-START##investigation_type::bacteria_archaeaproject_name::Desulfosporosinus meridiei S10, DSM 13257collection_date::January 1996lat_lon::-31.471 115.084depth::Missingalt_elev::Missingcountry::Australiaenvironment::Groundwaternum_replicons::1ref_biomaterial::DSM 13257, ATCC BAA-275biotic_relationship::Missingtrophic_level::Missingrel_to_oxygen::Anaerobeisol_growth_condt::11211250sequencing_meth::WGSassembly::Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPSfinishing_strategy::FinishedGOLD Stamp ID::Gi07597Type Strain::YesFunding Program::DOE-CSP 2010Gene Calling Method::GenePrimp, Prodigal 1.4Isolation Site::Groundwater contaminated with aromatic compounds from motor fuel in sandy soil from Eden Hill, Swan Coastal Plain, Perth, Western AustraliaIsolation Comments::isolated by Wendy RobertsonTemperature Range::MesophileTemperature Optimum::30CGram Staining::Gram-##MIGS-Data-END##
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