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ASM20973v1

Organism name:: Mycoplasmopsis fermentans PG18 (bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: PG18
BioSample:: SAMD00060938
BioProject:: PRJDA28473
Submitter:: M Bio Technology Incorporation
Date:: 2009/06/02
Assembly type:: na
Assembly level:: Chromosome
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_000209735.1 (latest)
RefSeq assembly accession:: GCF_000209735.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes

IDs: 589048 [UID] 272298 [GenBank] 589048 [RefSeq]

See Genome Information for Mycoplasmopsis fermentans

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000209735.1	=	GCF_000209735.1	ASM20973v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/26/2024 15:51:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::942
CDSs (total)::901
Genes (coding)::868
CDSs (with protein)::868
Genes (RNA)::41
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::35
ncRNAs::3
Pseudo Genes (total)::33
CDSs (without protein)::33
Pseudo Genes (ambiguous residues)::0 of 33
Pseudo Genes (frameshifted)::12 of 33
Pseudo Genes (incomplete)::22 of 33
Pseudo Genes (internal stop)::12 of 33
Pseudo Genes (multiple problems)::10 of 33
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,004,014
Total ungapped length	1,002,014
Gaps between scaffolds	0
Number of scaffolds	1
Scaffold N50	1,004,014
Scaffold L50	1
Number of contigs	21
Contig N50	129,169
Contig L50	4
Total number of chromosomes and plasmids	1
Number of component sequences (WGS or clone)	1

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	83.37	32.36	25.11

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ASM20973v1

See Genome Information for Mycoplasmopsis fermentans

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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