U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM17635v1

Organism name:
Citromicrobium bathyomarinum JL354 (a-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: JL354
BioSample:
SAMN02471020
BioProject:
PRJNA41177
Submitter:
State Key Laboratory of Marine Environmental Science
Date:
2009/11/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000176355.1 (latest)
RefSeq assembly accession:
GCF_000176355.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ADAE01

IDs: 220758 [UID] 220738 [GenBank] 220758 [RefSeq]

See Genome Information for Citromicrobium bathyomarinum

Pathogen Detection Resources

There are 31 assemblies for this organism

See more

History (Show revision history)

Comment

Source DNA and bacterial are available from the State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen 361005, PR China
Genome Coverage: 26.2x
Sequencing Technology: 454

Global statistics

Total sequence length3,273,334
Total ungapped length3,273,334
Number of contigs68
Contig N50212,719
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)68

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,273,334683,273,334212,71900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Citromicrobium bathyomarinum JL354Citromicrobium bathyomarinum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019857185.1Alteriqipengyuania abyssalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.3884.4389.17

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna