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ASM17613v1

Organism name:
Vibrio coralliilyticus ATCC BAA-450 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: ATCC:BAA-450
Infraspecific name:
Strain: ATCC BAA-450
BioSample:
SAMN02393819
BioProject:
PRJNA40491
Submitter:
Los Alamos National Laboratory (LANL), National Microbial Pathogen Data Resource (NMPDR)
Date:
2009/10/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000176135.1 (latest)
RefSeq assembly accession:
GCF_000176135.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ACZN01

IDs: 220318 [UID] 220298 [GenBank] 220318 [RefSeq]

See Genome Information for Vibrio coralliilyticus

There are 40 assemblies for this organism

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History (Show revision history)

Comment

DNA Source: Rita Colwell (http://www.cbcb.umd.edu) and Christopher Grim
Vibrio corallilyticus is the temperature-dependent causative agent of tissue lysis of the coral Pocillopora damicornis. Vibrio corallilyticus ATCC BAA-450 is the type strain of the species.
The NIAID funded Bioinformatics Resource Center PathoSystems ... Resource Integration Center (http://patricbrc.vbi.vt.edu/) is responsible for genome annotation updates of this record.
Genome Coverage: 8x
Sequencing Technology: Sanger; 454  more

Global statistics

Total sequence length5,680,628
Total ungapped length5,680,628
Number of contigs20
Contig N50919,232
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)20

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,680,628205,680,628919,23200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Vibrio coralliilyticus ATCC BAA-450Vibrio coralliilyticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019339365.1Vibrio neptuniustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.4368.3972.42

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected