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Source database (GenBank or RefSeq) File type

ASM15573v2

Organism name:: Octadecabacter arcticus 238 (a-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: 238
BioSample:: SAMN02603620
BioProject:: PRJNA19331
Submitter:: Moore Foundation
Date:: 2013/04/08
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_000155735.2 (latest)
RefSeq assembly accession:: GCF_000155735.2 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Phrap v. 0.990329
Sequencing technology:: Sanger dideoxy sequencing

IDs: 582548 [UID] 582528 [GenBank] 582548 [RefSeq]

See Genome Information for Octadecabacter arcticus

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000155735.2	=	GCF_000155735.2	ASM15573v2	Complete Genome	Latest GenBank, Latest RefSeq
GCA_000155735.1	=	GCF_000155735.1	ASM15573v1	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000155735.2-RS_2024_03_28
Annotation Date::03/28/2024 01:44:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,695
CDSs (total)::5,643
Genes (coding)::5,038
CDSs (with protein)::5,038
Genes (RNA)::52
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::43
ncRNAs::3
Pseudo Genes (total)::605
CDSs (without protein)::605
Pseudo Genes (ambiguous residues)::0 of 605
Pseudo Genes (frameshifted)::213 of 605
Pseudo Genes (incomplete)::401 of 605
Pseudo Genes (internal stop)::158 of 605
Pseudo Genes (multiple problems)::146 of 605
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,478,249
Total ungapped length	5,478,249
Total number of chromosomes and plasmids	3

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP003742.1	=	NC_020908.1
Plasmid pOA238_118	CP003743.1	=	NC_020909.1
Plasmid pOA238_160	CP003744.1	=	NC_020910.1

Molecule	Total Length
All	5,478,249
Chromosome	5,200,279
Plasmid pOA238_118	118,287
Plasmid pOA238_160	159,683

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	85.89	43.80	49.22

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ASM15573v2

See Genome Information for Octadecabacter arcticus

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

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