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ASM2156v1

Organism name:
Persephonella marina EX-H1 (aquificales)
Taxonomy check:
OK
Infraspecific name:
Strain: EX-H1
BioSample:
SAMN02604029
BioProject:
PRJNA12526
Submitter:
TIGR
Date:
2009/03/25
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000021565.1 (latest)
RefSeq assembly accession:
GCF_000021565.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 42588 [UID] 22368 [GenBank] 42588 [RefSeq]

See Genome Information for Persephonella marina

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000021565.1-RS_2024_05_05
Annotation Date::05/05/2024 13:43:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,098
CDSs (total)::2,049
Genes (coding)::2,048
CDSs (with protein)::2,048
Genes (RNA)::49
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::40
ncRNAs::3
Pseudo Genes (total)::1
CDSs (without protein)::1
Pseudo Genes (ambiguous residues)::0 of 1
Pseudo Genes (frameshifted)::0 of 1
Pseudo Genes (incomplete)::1 of 1
Pseudo Genes (internal stop)::0 of 1
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,983,966
Total ungapped length1,983,966
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000021575.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP001230.1=NC_012440.1
Plasmid unnamedCP001231.1=NC_012439.1

Assembly statistics

MoleculeTotal
Length
All1,983,966
Chromosome 1,930,284
Plasmid unnamed53,682

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Persephonella marina EX-H1Persephonella marina

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900182795.1Venenivibrio stagnispumantistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.880.420.53

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected