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ASM1034v1

Organism name:
Sulfurovum sp. NBC37-1 (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NBC37-1
BioSample:
SAMD00060915
BioProject:
PRJDA18965
Submitter:
Japan Agency for Marine-Earth Science and Technology
Date:
2007/07/11
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000010345.1 (latest)
RefSeq assembly accession:
GCF_000010345.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 31848 [UID] 11148 [GenBank] 31848 [RefSeq]

See Genome Information for Sulfurovum sp. NBC37-1

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000010345.1-RS_2024_06_16
Annotation Date::06/16/2024 13:13:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,605
CDSs (total)::2,549
Genes (coding)::2,523
CDSs (with protein)::2,523
Genes (RNA)::56
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::44
ncRNAs::3
Pseudo Genes (total)::26
CDSs (without protein)::26
Pseudo Genes (ambiguous residues)::0 of 26
Pseudo Genes (frameshifted)::6 of 26
Pseudo Genes (incomplete)::18 of 26
Pseudo Genes (internal stop)::5 of 26
Pseudo Genes (multiple problems)::3 of 26
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,562,277
Total ungapped length2,562,277
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000010355.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP009179.1=NC_009663.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,562,277

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sulfurovum sp. NBC37-1Sulfurovum sp. NBC37-1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000987835.1Sulfurovum lithotrophicumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.4064.6474.68

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna