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Source database (GenBank or RefSeq) File type

CanFam3.1

This assembly has been replaced. See current version

Organism name:

Canis lupus familiaris (dog)

Infraspecific name:

Breed: boxer

Sex:

female

BioSample:

SAMN02953603

BioProject:

PRJNA13179

Submitter:

Dog Genome Sequencing Consortium

Date:

2011/11/02

Synonyms:

canFam3

Assembly level:

Chromosome

Genome representation:

full

GenBank assembly accession:

GCA_000002285.2 (replaced)

RefSeq assembly accession:

GCF_000002285.3 (replaced)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

AAEX03

Assembly method:

Arachne v. April 2010

Genome coverage:

7x plus >90Mb finished sequence

Sequencing technology:

Sanger

IDs: 317138 [UID] 313658 [GenBank] 317138 [RefSeq]

See Genome Information for Canis lupus

Pathogen Detection Resources

There are 27 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000002285.4	≠	GCF_000002285.5	Dog10K_Boxer_Tasha	Chromosome	Latest GenBank, Latest RefSeq
GCA_000002285.3	n/a	n/a	canfam4	Chromosome	GenBank suppressed
GCA_000002285.2	≠	GCF_000002285.3	CanFam3.1	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000002285.1	≠	GCF_000002285.2	CanFam2.0	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000002285.1	=	GCF_000002285.1	CanFam2.0	Chromosome	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	2,410,976,875
Total ungapped length	2,392,715,236
Gaps between scaffolds	80
Number of scaffolds	3,310
Scaffold N50	45,876,610
Scaffold L50	20
Number of contigs	27,106
Contig N50	267,478
Contig L50	2,436
Total number of chromosomes and plasmids	40
Number of component sequences (WGS or clone)	27,106

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM000001.3	=	NC_006583.3	0
Chromosome 2	CM000002.3	=	NC_006584.3	0
Chromosome 3	CM000003.3	=	NC_006585.3	0
Chromosome 4	CM000004.3	=	NC_006586.3	0
Chromosome 5	CM000005.3	=	NC_006587.3	0
Chromosome 6	CM000006.3	=	NC_006588.3	0
Chromosome 7	CM000007.3	=	NC_006589.3	0
Chromosome 8	CM000008.3	=	NC_006590.3	0
Chromosome 9	CM000009.3	=	NC_006591.3	0
Chromosome 10	CM000010.3	=	NC_006592.3	0
Chromosome 11	CM000011.3	=	NC_006593.3	0
Chromosome 12	CM000012.3	=	NC_006594.3	0
Chromosome 13	CM000013.3	=	NC_006595.3	0
Chromosome 14	CM000014.3	=	NC_006596.3	0
Chromosome 15	CM000015.3	=	NC_006597.3	0
Chromosome 16	CM000016.3	=	NC_006598.3	0
Chromosome 17	CM000017.3	=	NC_006599.3	0
Chromosome 18	CM000018.3	=	NC_006600.3	0
Chromosome 19	CM000019.3	=	NC_006601.3	0
Chromosome 20	CM000020.3	=	NC_006602.3	0
Chromosome 21	CM000021.3	=	NC_006603.3	0
Chromosome 22	CM000022.3	=	NC_006604.3	0
Chromosome 23	CM000023.3	=	NC_006605.3	0
Chromosome 24	CM000024.3	=	NC_006606.3	0
Chromosome 25	CM000025.3	=	NC_006607.3	0
Chromosome 26	CM000026.3	=	NC_006608.3	0
Chromosome 27	CM000027.3	=	NC_006609.3	0
Chromosome 28	CM000028.3	=	NC_006610.3	0
Chromosome 29	CM000029.3	=	NC_006611.3	0
Chromosome 30	CM000030.3	=	NC_006612.3	0
Chromosome 31	CM000031.3	=	NC_006613.3	0
Chromosome 32	CM000032.3	=	NC_006614.3	0
Chromosome 33	CM000033.3	=	NC_006615.3	0
Chromosome 34	CM000034.3	=	NC_006616.3	0
Chromosome 35	CM000035.3	=	NC_006617.3	0
Chromosome 36	CM000036.3	=	NC_006618.3	0
Chromosome 37	CM000037.3	=	NC_006619.3	0
Chromosome 38	CM000038.3	=	NC_006620.3	0
Chromosome X	CM000039.3	=	NC_006621.3	0
unplaced	n/a	n/a	n/a	3,228

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	2,410,960,148	3,309	2,392,698,509	45,876,610	23,796	80
Chromosome 1	122,678,785	2	122,070,623	69,553,653	1,120	2
Chromosome 2	85,426,708	4	84,986,334	45,293,151	824	4
Chromosome 3	91,889,043	3	91,547,408	54,667,354	704	3
Chromosome 4	88,276,631	2	88,054,606	77,783,465	620	2
Chromosome 5	88,915,250	4	88,556,672	56,102,407	888	4
Chromosome 6	77,573,801	5	77,066,678	59,841,912	781	5
Chromosome 7	80,974,532	4	80,608,032	61,909,399	603	4
Chromosome 8	74,330,416	2	74,071,572	72,170,317	581	2
Chromosome 9	61,074,082	5	60,688,643	13,298,980	759	5
Chromosome 10	69,331,447	2	68,960,673	52,772,705	742	2
Chromosome 11	74,389,097	2	74,159,344	65,333,807	531	2
Chromosome 12	72,498,081	1	72,323,870	72,497,981	481	1
Chromosome 13	63,241,923	2	62,975,555	33,587,536	486	2
Chromosome 14	60,966,679	1	60,715,390	60,966,579	344	1
Chromosome 15	64,190,966	1	63,855,495	64,190,866	636	1
Chromosome 16	59,632,846	3	59,207,916	20,537,376	439	3
Chromosome 17	64,289,059	2	64,090,349	51,516,082	511	2
Chromosome 18	55,844,845	2	55,531,043	30,512,770	587	2
Chromosome 19	53,741,614	2	53,607,168	35,994,929	302	2
Chromosome 20	58,134,056	2	57,839,694	32,947,532	685	2
Chromosome 21	50,858,623	1	50,623,162	50,858,523	373	1
Chromosome 22	61,439,934	2	61,283,606	55,660,265	369	2
Chromosome 23	52,294,480	1	52,169,448	52,294,380	307	1
Chromosome 24	47,698,779	1	47,496,273	47,698,679	454	1
Chromosome 25	51,628,933	4	51,352,425	27,168,105	380	4
Chromosome 26	38,964,690	2	38,804,934	26,115,843	389	2
Chromosome 27	45,876,710	1	45,726,041	45,876,610	392	1
Chromosome 28	41,182,112	3	40,985,910	39,421,902	392	3
Chromosome 29	41,845,238	1	41,709,477	41,845,138	263	1
Chromosome 30	40,214,260	1	40,042,580	40,214,160	371	1
Chromosome 31	39,895,921	2	39,763,055	38,889,607	286	2
Chromosome 32	38,810,281	1	38,755,072	38,810,181	189	1
Chromosome 33	31,377,067	2	31,238,533	19,069,683	262	2
Chromosome 34	42,124,431	2	41,922,628	29,647,846	295	2
Chromosome 35	26,524,999	1	26,416,647	26,524,899	210	1
Chromosome 36	30,810,995	1	30,684,652	30,810,895	253	1
Chromosome 37	30,902,991	1	30,741,653	30,902,891	326	1
Chromosome 38	23,914,537	1	23,779,076	23,914,437	307	1
Chromosome X	123,869,142	2	123,181,734	123,773,608	1,031	1
unplaced	83,326,164	3,228	75,104,538	64,123	4,323	0

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CanFam3.1

See Genome Information for Canis lupus

Pathogen Detection Resources

There are 27 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear