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Source database (GenBank or RefSeq) File type

NCBI36

This assembly has been replaced. See current version

Organism name:: Homo sapiens (human)
BioProject:: PRJNA31257
Submitter:: International Human Genome Sequencing Consortium
Date:: 2006/03/03
Synonyms:: hg18
Assembly type:: haploid-with-alt-loci
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: n/a
RefSeq assembly accession:: GCF_000001405.12 (replaced)
RefSeq assembly and GenBank assembly identical:: n/a

IDs: 2928 [UID] 2928 [RefSeq]

See Genome Information for Homo sapiens

There are 1137 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000001405.29	≠	GCF_000001405.40	GRCh38.p14	Chromosome	Latest GenBank, Latest RefSeq
GCA_000001405.28	≠	GCF_000001405.39	GRCh38.p13	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.27	≠	GCF_000001405.38	GRCh38.p12	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.26	=	GCF_000001405.37	GRCh38.p11	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.25	=	GCF_000001405.36	GRCh38.p10	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.24	=	GCF_000001405.35	GRCh38.p9	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.23	=	GCF_000001405.34	GRCh38.p8	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.22	=	GCF_000001405.33	GRCh38.p7	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.21	=	GCF_000001405.32	GRCh38.p6	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.20	=	GCF_000001405.31	GRCh38.p5	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.19	=	GCF_000001405.30	GRCh38.p4	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.18	=	GCF_000001405.29	GRCh38.p3	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.17	=	GCF_000001405.28	GRCh38.p2	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.16	=	GCF_000001405.27	GRCh38.p1	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.15	=	GCF_000001405.26	GRCh38	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.14	=	GCF_000001405.25	GRCh37.p13	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.13	=	GCF_000001405.24	GRCh37.p12	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.12	=	GCF_000001405.23	GRCh37.p11	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.11	=	GCF_000001405.22	GRCh37.p10	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.10	=	GCF_000001405.21	GRCh37.p9	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.9	n/a	n/a	GRCh37.p8	Chromosome	Replaced GenBank
GCA_000001405.8	n/a	n/a	GRCh37.p7	Chromosome	Replaced GenBank
GCA_000001405.7	n/a	n/a	GRCh37.p6	Chromosome	Replaced GenBank
GCA_000001405.6	=	GCF_000001405.17	GRCh37.p5	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.5	n/a	n/a	GRCh37.p4	Chromosome	Replaced GenBank
GCA_000001405.4	n/a	n/a	GRCh37.p3	Chromosome	Replaced GenBank
GCA_000001405.3	=	GCF_000001405.14	GRCh37.p2	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.2	n/a	n/a	GRCh37.p1	Chromosome	Replaced GenBank
GCA_000001405.1	=	GCF_000001405.13	GRCh37	Chromosome	Replaced GenBank, Replaced RefSeq
n/a	n/a	GCF_000001405.12	NCBI36	Chromosome	Replaced RefSeq
n/a	n/a	GCF_000001405.11	NCBI35	Chromosome	Replaced RefSeq
n/a	n/a	GCF_000001405.10	NCBI34	Chromosome	Replaced RefSeq
n/a	n/a	GCF_000001405.9	NCBI34	Chromosome	Replaced RefSeq
n/a	n/a	GCF_000001405.8	NCBI33	Chromosome	Replaced RefSeq

Comment

Global statistics*

Number of regions with alternate loci or patches	4
Total sequence length	3,093,104,542
Total ungapped length	2,870,620,296
Gaps between scaffolds	301
Number of scaffolds	367
Scaffold N50	38,509,590
Scaffold L50	25
Number of contigs	1,006
Contig N50	38,509,590
Contig L50	25
Total number of chromosomes and plasmids	24
Number of component sequences (WGS or clone)	26,976

*Note: Statistics shown for the primary assembly-unit. See the statistics report for additional statistics.

Name	Location
PAR#1	X:1-2709520
PAR#2	X:154584238-154913754
PAR#1	Y:1-2709520
PAR#2	Y:57443438-57772954

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	n/a	n/a	NC_000001.9	10
Chromosome 2	n/a	n/a	NC_000002.10	1
Chromosome 3	n/a	n/a	NC_000003.10	4
Chromosome 4	n/a	n/a	NC_000004.10	5
Chromosome 5	n/a	n/a	NC_000005.8	1
Chromosome 6	n/a	n/a	NC_000006.10	2
Chromosome 7	n/a	n/a	NC_000007.12	3
Chromosome 8	n/a	n/a	NC_000008.9	8
Chromosome 9	n/a	n/a	NC_000009.10	7
Chromosome 10	n/a	n/a	NC_000010.9	1
Chromosome 11	n/a	n/a	NC_000011.8	3
Chromosome 12	n/a	n/a	NC_000012.10	0
Chromosome 13	n/a	n/a	NC_000013.9	1
Chromosome 14	n/a	n/a	NC_000014.7	0
Chromosome 15	n/a	n/a	NC_000015.8	5
Chromosome 16	n/a	n/a	NC_000016.8	1
Chromosome 17	n/a	n/a	NC_000017.9	17
Chromosome 18	n/a	n/a	NC_000018.8	1
Chromosome 19	n/a	n/a	NC_000019.8	2
Chromosome 20	n/a	n/a	NC_000020.9	0
Chromosome 21	n/a	n/a	NC_000021.7	9
Chromosome 22	n/a	n/a	NC_000022.9	2
Chromosome X	n/a	n/a	NC_000023.9	5
Chromosome Y	n/a	n/a	NC_000024.8	0

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
Hs6_111611_36	6	n/a	n/a	NT_113892.1
Hs6_111612_36	6	n/a	n/a	NT_113893.1
Hs6_111613_36	6	n/a	n/a	NT_113894.1
Hs6_111614_36	6	n/a	n/a	NT_113895.1
Hs6_111615_36	6	n/a	n/a	NT_113896.1
Hs6_111616_36	6	n/a	n/a	NT_113897.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
Hs5_111520_36	5	n/a	n/a	NT_113801.1
Hs5_111521_36	5	n/a	n/a	NT_113802.1

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	3,093,104,542	367	2,870,620,296	38,509,590	656	301
Chromosome 1	AllAssembled moleculeUnlocalized scaffolds	248,462,984247,249,7191,213,265	493910	226,204,084224,999,7191,204,365	56,413,06156,413,061145,186	89089	42420
Chromosome 2	AllAssembled moleculeUnlocalized scaffolds	243,136,720242,951,149185,571	19181	237,895,369237,709,798185,571	68,373,98068,373,980185,571	330	18180
Chromosome 3	AllAssembled moleculeUnlocalized scaffolds	200,101,083199,501,827599,256	954	195,304,083194,704,827599,256	100,530,253100,530,253146,010	000	770
Chromosome 4	AllAssembled moleculeUnlocalized scaffolds	191,915,711191,273,063642,648	19145	187,939,711187,297,063642,648	23,438,00923,438,009189,789	000	14140
Chromosome 5	AllAssembled moleculeUnlocalized scaffolds	181,001,553180,857,866143,687	761	177,846,453177,702,766143,687	41,199,37141,199,371143,687	000	770
Chromosome 6	AllAssembled moleculeUnlocalized scaffolds	172,725,554170,899,9921,825,562	1192	169,096,754167,273,9921,822,762	48,945,89048,945,8901,305,230	28028	11110
Chromosome 7	AllAssembled moleculeUnlocalized scaffolds	159,271,083158,821,424449,659	15123	155,401,283154,952,424448,859	47,690,38247,690,382153,959	808	12120
Chromosome 8	AllAssembled moleculeUnlocalized scaffolds	146,868,636146,274,826593,810	18108	143,203,485142,612,826590,659	38,454,50238,454,502183,161	59158	990
Chromosome 9	AllAssembled moleculeUnlocalized scaffolds	141,119,686140,273,252846,434	46397	120,983,627120,143,252840,375	39,653,68639,653,686173,443	58058	42420
Chromosome 10	AllAssembled moleculeUnlocalized scaffolds	135,488,012135,374,737113,275	19181	131,735,790131,624,737111,053	30,112,61330,112,613113,275	23023	20200
Chromosome 11	AllAssembled moleculeUnlocalized scaffolds	134,567,678134,452,384115,294	1183	131,245,847131,130,753115,094	38,509,59038,509,59039,615	312	880
Chromosome 12	Assembled molecule	132,349,534	7	130,303,034	32,815,934	3	8
Chromosome 13	AllAssembled moleculeUnlocalized scaffolds	114,329,838114,142,980186,858	651	95,746,83895,559,980186,858	67,740,32567,740,325186,858	000	880
Chromosome 14	Assembled molecule	106,368,585	1	88,290,585	88,290,585	0	3
Chromosome 15	AllAssembled moleculeUnlocalized scaffolds	100,923,261100,338,915584,346	16115	81,920,10381,341,915578,188	53,619,96553,619,965139,260	50050	12120
Chromosome 16	AllAssembled moleculeUnlocalized scaffolds	88,932,73988,827,254105,485	651	78,990,18978,884,754105,435	42,003,58242,003,582105,485	101	660
Chromosome 17	AllAssembled moleculeUnlocalized scaffolds	80,592,35578,774,7421,817,613	271017	79,608,58177,800,2201,808,361	21,163,83321,163,833147,354	1660166	10100
Chromosome 18	AllAssembled moleculeUnlocalized scaffolds	76,121,41576,117,1534,262	651	74,660,41774,656,1554,262	20,074,19920,074,1994,262	000	440
Chromosome 19	AllAssembled moleculeUnlocalized scaffolds	64,063,50963,811,651251,858	642	56,037,50955,785,651251,858	31,383,02931,383,029159,169	000	770
Chromosome 20	Assembled molecule	62,435,964	6	59,505,253	26,144,333	0	6
Chromosome 21	AllAssembled moleculeUnlocalized scaffolds	48,224,01646,944,3231,279,693	1349	35,450,93134,171,4381,279,493	28,617,42928,617,429158,069	862	550
Chromosome 22	AllAssembled moleculeUnlocalized scaffolds	49,898,75049,691,432207,318	1192	35,058,65034,851,332207,318	23,276,30223,276,302166,566	000	12120
Chromosome X	AllAssembled moleculeUnlocalized scaffolds	156,432,922154,913,7541,519,168	22175	152,538,766151,058,7541,480,012	27,718,69227,718,6921,005,289	1570157	16160
Chromosome Y	Assembled molecule	57,772,954	17	25,652,954	6,265,435	0	14

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NCBI36

See Genome Information for Homo sapiens

There are 1137 assemblies for this organism

History (Show revision history)

Comment

Global statistics*

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Global assembly definition

Regions

Assembly statistics

Unit Name	Scaffold Count	Total Length	Ungapped Length	Scaffold N50	Spanned Gaps
c6_COX	1	4,731,698	4,731,698	4,731,698	0
c6_QBL	6	4,249,272	4,249,272	623,992	0
c22_H2	1	63,661	63,661	63,661	0
c5_H2	2	1,754,870	1,753,011	1,146,088	20
DR53	1	150,447	150,447	150,447	0