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fChiDew1

Organism name:
Chionobathyscus dewitti (bony fishes)
BioSample:
SAMEA104243014
BioProject:
PRJEB53180
Submitter:
WELLCOME SANGER INSTITUTE
Date:
2022/07/13
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_943594065.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
CALSCL01
Genome coverage:
53x

IDs: 13297971 [UID] 34730598 [GenBank]

See Genome Information for Chionobathyscus dewitti

History (Show revision history)

Comment

The assembly fChiDew1 is based on 53x Illumina HiSeqX data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial assembly generation using SoapDeNovo and scaffolding using cross_genome, which maps genome synteny to ... merge scaffolds. Finally, the assembly was curated to remove sequence contamination.  more

Global statistics

Total sequence length899,757,586
Total ungapped length843,577,940
Gaps between scaffolds0
Number of scaffolds555,224
Scaffold N505,842
Scaffold L5021,873
Number of contigs1,061,593
Contig N501,913
Contig L5097,422
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)555,224

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced899,757,586555,224843,577,9405,842506,3690