U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



L_monocytogenes_2HF33

Organism name:
Listeria monocytogenes (firmicutes)
Taxonomy check:
OK
Isolate:
Listeria monocytogenes strain 2HF33
BioSample:
SAMEA6786265
BioProject:
PRJEB35939
Submitter:
Institute of Biotechnology, University of Helsinki
Date:
2020/04/25
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_902838845.1 (latest)
RefSeq assembly accession:
GCF_902838845.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CADFZX01
Genome coverage:
50x

IDs: 7050651 [UID] 19358388 [GenBank] 20098918 [RefSeq]

See Genome Information for Listeria monocytogenes

There are 61669 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,125,332
Total ungapped length3,125,332
Number of contigs80
Contig N50482,292
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)80

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,125,332803,125,332482,29200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Listeria monocytogenesListeria monocytogenes

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000525815.1Listeria monocytogenes FSL F6-684type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000525815.1Listeria monocytogenestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.5888.7197.42
Best-match type98.5888.7197.42

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna