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AG-337-I18

Organism name:
uncultured Pelagibacteraceae bacterium (a-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
AG-337-I18
BioSample:
SAMEA6077932
BioProject:
PRJEB33281
Submitter:
WOODS HOLE OCEANOGRAPHIC INSTITUTION
Date:
2019/10/28
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_902526085.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
CABZJN01
Genome coverage:
882x

IDs: 5165511 [UID] 15073088 [GenBank]

See Genome Information for uncultured Pelagibacteraceae bacterium

Pathogen Detection Resources

There are 2452 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,146,641
Total ungapped length1,146,641
Number of contigs40
Contig N5050,735
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)40

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced1,146,641401,146,64150,73500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
uncultured Pelagibacteraceae bacteriumuncultured Pelagibacteraceae bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000012345.1Candidatus Pelagibacter ubiquesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.134.433.88

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena