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Source database (GenBank or RefSeq) File type

25964_2#272

Organism name:: Klebsiella variicola (enterobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: 4928STDY7387758
BioSample:: SAMEA104694395
BioProject:: PRJEB22252
Submitter:: SC
Date:: 2019/07/09
Assembly type:: na
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_902166725.1 (latest)
RefSeq assembly accession:: GCF_902166725.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Genome coverage:: 56x

IDs: 3812991 [UID] 12057468 [GenBank] 21731068 [RefSeq]

See Genome Information for Klebsiella variicola

Pathogen Detection Resources

There are 1689 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_902166725.1	=	GCF_902166725.1	25964_2#272	Chromosome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
The organism was changed from 'Klebsiella pneumoniae' to 'Klebsiella variicola' in June 2020.

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::01/05/2024 03:12:40
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,086
CDSs (total)::5,021
Genes (coding)::4,910
CDSs (with protein)::4,910
Genes (RNA)::65
rRNAs::5 (5S)
complete rRNAs::5 (5S)
tRNAs::53
ncRNAs::7
Pseudo Genes (total)::111
CDSs (without protein)::111
Pseudo Genes (ambiguous residues)::0 of 111
Pseudo Genes (frameshifted)::44 of 111
Pseudo Genes (incomplete)::58 of 111
Pseudo Genes (internal stop)::24 of 111
Pseudo Genes (multiple problems)::13 of 111
##Genome-Annotation-Data-END##

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##This Genome (query)::GCA_902166725.1
Current Name::Klebsiella variicola
Previous Name::Klebsiella pneumoniae
Date Updated::2020-06-25
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_000828055.2
A1 Name::Klebsiella variicola
A1 ANI::99.17%
A1 Query Coverage::95.48%
A1 Subject Coverage::91.09%
Analysis 2 (A2)::Query vs. TYPE genome for previous name
A2 Genome (subject)::GCA_000281755.1
A2 Name::Klebsiella pneumoniae
A2 ANI::94.6%
A2 Query Coverage::86.69%
A2 Subject Coverage::82.84%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length	5,989,149
Total ungapped length	5,267,251
Gaps between scaffolds	0
Number of scaffolds	1
Scaffold N50	5,989,149
Scaffold L50	1
Number of contigs	84
Contig N50	139,011
Contig L50	14
Total number of chromosomes and plasmids	1
Number of component sequences (WGS or clone)	1

	ANI	Query coverage	Subject coverage
Declared type	99.16	95.48	91.09
Best-match type	99.16	95.48	91.09

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25964_2#272

See Genome Information for Klebsiella variicola

Pathogen Detection Resources

There are 1689 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Taxonomic-Update-Statistics

Global statistics

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Average Nucleotide Identity (ANI) data

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