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Source database (GenBank or RefSeq) File type

25964_2#233

Organism name:: Enterococcus faecalis (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: 4928STDY7387718
BioSample:: SAMEA104694355
BioProject:: PRJEB22252
Submitter:: SC
Date:: 2019/07/09
Assembly type:: na
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_902166685.1 (latest)
RefSeq assembly accession:: GCF_902166685.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Genome coverage:: 44x

IDs: 3812941 [UID] 12057308 [GenBank] 15422058 [RefSeq]

See Genome Information for Enterococcus faecalis

Pathogen Detection Resources

There are 8807 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_902166685.1	=	GCF_902166685.1	25964_2#233	Chromosome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/14/2024 00:51:36
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,006
CDSs (total)::2,955
Genes (coding)::2,731
CDSs (with protein)::2,731
Genes (RNA)::51
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::44
ncRNAs::4
Pseudo Genes (total)::224
CDSs (without protein)::224
Pseudo Genes (ambiguous residues)::1 of 224
Pseudo Genes (frameshifted)::22 of 224
Pseudo Genes (incomplete)::193 of 224
Pseudo Genes (internal stop)::22 of 224
Pseudo Genes (multiple problems)::14 of 224
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,460,686
Total ungapped length	2,810,156
Gaps between scaffolds	0
Number of scaffolds	1
Scaffold N50	3,460,686
Scaffold L50	1
Number of contigs	490
Contig N50	13,614
Contig L50	53
Total number of chromosomes and plasmids	1
Number of component sequences (WGS or clone)	1

	ANI	Query coverage	Subject coverage
Declared type	99.17	89.90	88.13
Best-match type	99.17	89.90	88.13

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25964_2#233

See Genome Information for Enterococcus faecalis

Pathogen Detection Resources

There are 8807 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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