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25964_2#219

Organism name:
Enterococcus durans (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 4928STDY7387704
BioSample:
SAMEA104694341
BioProject:
PRJEB22252
Submitter:
SC
Date:
2019/07/09
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_902166615.1 (latest)
RefSeq assembly accession:
GCF_902166615.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
39x

IDs: 3812861 [UID] 12057208 [GenBank] 25920838 [RefSeq]

See Genome Information for Enterococcus durans

There are 168 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::05/07/2023 01:24:30
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,576
CDSs (total)::2,525
Genes (coding)::2,405
CDSs (with protein)::2,405
Genes (RNA)::51
rRNAs::4, 1, 1 (5S, 16S, 23S)
complete rRNAs::4, 1 (5S, 16S)
partial rRNAs::1 (23S)
tRNAs::41
ncRNAs::4
Pseudo Genes (total)::120
CDSs (without protein)::120
Pseudo Genes (ambiguous residues)::1 of 120
Pseudo Genes (frameshifted)::20 of 120
Pseudo Genes (incomplete)::86 of 120
Pseudo Genes (internal stop)::26 of 120
Pseudo Genes (multiple problems)::12 of 120
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,195,719
Total ungapped length2,661,832
Gaps between scaffolds0
Number of scaffolds1
Scaffold N503,195,719
Scaffold L501
Number of contigs198
Contig N5031,467
Contig L5030
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_902166614.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome LR607372.1=NZ_LR607372.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 3,195,71912,661,8323,195,7191980

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterococcus duransEnterococcus durans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_019048325.1Enterococcus duranstype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019048325.1Enterococcus duranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.6798.4984.68
Best-match type99.6798.4984.68

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna