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25426_7#361

  • Anomalous assembly.
Organism name:
Citrobacter freundii (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 4928STDY7071646
BioSample:
SAMEA104567751
BioProject:
PRJEB22252
Submitter:
SC
Date:
2019/07/12
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_902166445.1 (latest)
RefSeq assembly accession:
GCF_902166445.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABHKF01
Genome coverage:
50x

IDs: 3812721 [UID] 12056928 [GenBank] 12323608 [RefSeq]

See Genome Information for Citrobacter freundii

Pathogen Detection Resources

There are 2636 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length5,518,303
Total ungapped length5,518,303
Number of contigs216
Contig N50158,551
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)216

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced5,518,3032165,518,303158,55100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Citrobacter freundiiCitrobacter freundii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000312465.1Citrobacter freundii ATCC 8090 = MTCC 1658 = NBRC 12681type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000312465.1Citrobacter freundiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9380.2288.52
Best-match type98.9380.2288.52

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna