U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



26009_2#43

Organism name:
Klebsiella variicola (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 4928STDY7387950
BioSample:
SAMEA4623358
BioProject:
PRJEB22252
Submitter:
SC
Date:
2019/07/12
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_902166195.1 (latest)
RefSeq assembly accession:
GCF_902166195.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABHJJ01
Genome coverage:
60x

IDs: 3812411 [UID] 12056308 [GenBank] 15520088 [RefSeq]

See Genome Information for Klebsiella variicola

There are 1689 assemblies for this organism

See more

History (Show revision history)

Comment

The organism was changed from 'Klebsiella pneumoniae' to 'Klebsiella variicola' in June 2020.

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##
This Genome (query)::GCA_902166195.1
Current Name::Klebsiella variicola
Previous Name::Klebsiella pneumoniae
Date Updated::2020-06-25
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_900978195.1
A1 Name::Klebsiella variicola
A1 ANI::99.28%
A1 Query Coverage::88.98%
A1 Subject Coverage::94.55%
Analysis 2 (A2)::Query vs. TYPE genome for previous name
A2 Genome (subject)::GCA_000281755.1
A2 Name::Klebsiella pneumoniae
A2 ANI::94.58%
A2 Query Coverage::79.74%
A2 Subject Coverage::84.08%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length5,814,327
Total ungapped length5,812,321
Gaps between scaffolds0
Number of scaffolds45
Scaffold N50585,683
Scaffold L503
Number of contigs56
Contig N50504,247
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)45

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,814,327455,812,321585,683110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella variicolaKlebsiella variicola

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000828055.2Klebsiella variicolatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000828055.2Klebsiella variicolatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2889.3294.03
Best-match type99.2889.3294.03

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna