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25964_2#271

Organism name:
Klebsiella michiganensis (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 4928STDY7387757
BioSample:
SAMEA104694394
BioProject:
PRJEB22252
Submitter:
SC
Date:
2019/07/12
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_902164835.1 (latest)
RefSeq assembly accession:
GCF_902164835.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABHEP01
Genome coverage:
62x

IDs: 3811181 [UID] 12053848 [GenBank] 15517668 [RefSeq]

See Genome Information for Klebsiella michiganensis

There are 989 assemblies for this organism

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History (Show revision history)

Comment

The organism was changed from 'Klebsiella oxytoca' to 'Klebsiella michiganensis' in June 2020.

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##
This Genome (query)::GCA_902164835.1
Current Name::Klebsiella michiganensis
Previous Name::Klebsiella oxytoca
Date Updated::2020-06-25
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_009173485.1
A1 Name::Klebsiella michiganensis
A1 ANI::98.73%
A1 Query Coverage::85.71%
A1 Subject Coverage::89.01%
Analysis 2 (A2)::Query vs. TYPE genome for previous name
A2 Genome (subject)::GCA_001598695.1
A2 Name::Klebsiella oxytoca
A2 ANI::92.52%
A2 Query Coverage::76.12%
A2 Subject Coverage::84.02%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length6,395,322
Total ungapped length6,393,912
Gaps between scaffolds0
Number of scaffolds90
Scaffold N50226,211
Scaffold L507
Number of contigs99
Contig N50170,327
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)90

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,395,322906,393,912226,21190

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella michiganensisKlebsiella michiganensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_009173485.1Klebsiella michiganensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009173485.1Klebsiella michiganensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7285.7189.01
Best-match type98.7285.7189.01

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna