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25426_7#101

Organism name:
Klebsiella grimontii (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 4928STDY7071328
BioSample:
SAMEA104567438
BioProject:
PRJEB22252
Submitter:
SC
Date:
2019/07/09
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_902164675.1 (latest)
RefSeq assembly accession:
GCF_902164675.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
43x

IDs: 3810931 [UID] 12053348 [GenBank] 15421938 [RefSeq]

See Genome Information for Klebsiella grimontii

There are 226 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
The organism was changed from 'Klebsiella oxytoca' to 'Klebsiella grimontii' in June 2020.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/05/2024 03:06:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,059
CDSs (total)::4,974
Genes (coding)::4,887
CDSs (with protein)::4,887
Genes (RNA)::85
rRNAs::3, 1, 1 (5S, 16S, 23S)
complete rRNAs::3, 1 (5S, 16S)
partial rRNAs::1 (23S)
tRNAs::73
ncRNAs::7
Pseudo Genes (total)::87
CDSs (without protein)::87
Pseudo Genes (ambiguous residues)::0 of 87
Pseudo Genes (frameshifted)::30 of 87
Pseudo Genes (incomplete)::55 of 87
Pseudo Genes (internal stop)::16 of 87
Pseudo Genes (multiple problems)::12 of 87
##Genome-Annotation-Data-END##

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##
This Genome (query)::GCA_902164675.1
Current Name::Klebsiella grimontii
Previous Name::Klebsiella oxytoca
Date Updated::2020-06-25
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_900200035.1
A1 Name::Klebsiella grimontii
A1 ANI::99.56%
A1 Query Coverage::97.98%
A1 Subject Coverage::84.97%
Analysis 2 (A2)::Query vs. TYPE genome for previous name
A2 Genome (subject)::GCA_001598695.1
A2 Name::Klebsiella oxytoca
A2 ANI::91.75%
A2 Query Coverage::89.24%
A2 Subject Coverage::82.41%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length6,099,119
Total ungapped length5,349,956
Gaps between scaffolds0
Number of scaffolds1
Scaffold N506,099,119
Scaffold L501
Number of contigs109
Contig N50118,606
Contig L5014
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_902164674.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome LR607336.1=NZ_LR607336.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 6,099,11915,349,9566,099,1191090

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella grimontiiKlebsiella grimontii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900200035.1Klebsiella grimontiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900200035.1Klebsiella grimontiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.5597.9884.97
Best-match type99.5597.9884.97

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna