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25964_2#119

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: 4928STDY7071700
BioSample:
SAMEA4608446
BioProject:
PRJEB22252
Submitter:
SC
Date:
2019/07/12
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_902163405.1 (latest)
RefSeq assembly accession:
GCF_902163405.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABGZL01
Genome coverage:
56x

IDs: 3807971 [UID] 12047398 [GenBank] 12149178 [RefSeq]

See Genome Information for Escherichia coli

There are 267822 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length5,756,218
Total ungapped length5,756,218
Number of contigs264
Contig N50104,732
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)264

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,756,2182645,756,218104,73200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000350825.1Escherichia coli KTE26claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000350825.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.2578.3085.57
Best-match type98.2578.3085.57

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna