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25964_2#23

Organism name:
Klebsiella grimontii (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 4928STDY7071144
BioSample:
SAMEA104567268
BioProject:
PRJEB22252
Submitter:
SC
Date:
2019/07/12
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_902162565.1 (latest)
RefSeq assembly accession:
GCF_902162565.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABGVY01
Genome coverage:
63x

IDs: 3805831 [UID] 12043068 [GenBank] 15517268 [RefSeq]

See Genome Information for Klebsiella grimontii

There are 226 assemblies for this organism

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History (Show revision history)

Comment

The organism was changed from 'Klebsiella oxytoca' to 'Klebsiella grimontii' in June 2020.

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##
This Genome (query)::GCA_902162565.1
Current Name::Klebsiella grimontii
Previous Name::Klebsiella oxytoca
Date Updated::2020-06-25
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_900200035.1
A1 Name::Klebsiella grimontii
A1 ANI::99.13%
A1 Query Coverage::91.08%
A1 Subject Coverage::89.35%
Analysis 2 (A2)::Query vs. TYPE genome for previous name
A2 Genome (subject)::GCA_001598695.1
A2 Name::Klebsiella oxytoca
A2 ANI::91.68%
A2 Query Coverage::79.43%
A2 Subject Coverage::82.97%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length6,052,304
Total ungapped length6,051,331
Gaps between scaffolds0
Number of scaffolds65
Scaffold N50518,764
Scaffold L505
Number of contigs68
Contig N50518,764
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)65

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,052,304656,051,331518,76430

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella grimontiiKlebsiella grimontii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900200035.1Klebsiella grimontiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900200035.1Klebsiella grimontiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1291.0889.35
Best-match type99.1291.0889.35

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna