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25426_7#348

Organism name:
Enterococcus avium (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 4928STDY7071631
BioSample:
SAMEA104567736
BioProject:
PRJEB22252
Submitter:
SC
Date:
2019/07/08
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_902162105.1 (latest)
RefSeq assembly accession:
GCF_902162105.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABGUH01
Genome coverage:
57x

IDs: 3803431 [UID] 12038288 [GenBank] 21715668 [RefSeq]

See Genome Information for Enterococcus avium

There are 123 assemblies for this organism

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History (Show revision history)

Comment

The organism was changed from 'Enterococcus faecium' to 'Enterococcus avium' in July 2020.

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##
This Genome (query)::GCA_902162105.1
Current Name::Enterococcus avium
Previous Name::Enterococcus faecium
Date Updated::2020-07-31
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_001885775.1
A1 Name::Enterococcus avium
A1 ANI::98.63%
A1 Query Coverage::86.41%
A1 Subject Coverage::88.25%
Analysis 2 (A2)::Query vs. TYPE genome for previous name
A2 Genome (subject)::GCA_900447735.1
A2 Name::Enterococcus faecium
A2 ANI::85.53%
A2 Query Coverage::1.79%
A2 Subject Coverage::3.05%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length4,560,983
Total ungapped length4,560,679
Gaps between scaffolds0
Number of scaffolds175
Scaffold N50114,924
Scaffold L5013
Number of contigs176
Contig N50103,268
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)175

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,560,9831754,560,679114,92410

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterococcus aviumEnterococcus avium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000406965.1Enterococcus avium ATCC 14025type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000406965.1Enterococcus aviumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.6187.1686.03
Best-match type98.6187.1686.03

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna