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25426_7#169

  • Anomalous assembly.
Organism name:
Klebsiella oxytoca (enterobacteria)
Taxonomy check:
Failed
Infraspecific name:
Strain: 4928STDY7071417
BioSample:
SAMEA104567525
BioProject:
PRJEB22252
Submitter:
SC
Date:
2019/07/08
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Assembly anomaly:
contaminated, unverified source organism
Excluded from RefSeq:
  • contaminated
  • unverified source organism
GenBank assembly accession:
GCA_902160375.1 (latest)
RefSeq assembly accession:
GCF_902160375.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABGNL01
Genome coverage:
29x

IDs: 3800961 [UID] 12033328 [GenBank] 12150238 [RefSeq]

See Genome Information for Klebsiella oxytoca

Pathogen Detection Resources

There are 1028 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length6,834,450
Total ungapped length6,834,450
Number of contigs227
Contig N50363,526
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)227

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced6,834,4502276,834,450363,52600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella oxytocaKlebsiella oxytoca

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900636985.1Klebsiella oxytocatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900200035.1Klebsiella grimontiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type91.6870.7382.52
Best-match type99.3679.6788.26

ANI result

Taxonomy check statusBest match statusComment
Failedmismatchna