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25426_7#142

Organism name:
Enterobacter kobei (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 4928STDY7071389
BioSample:
SAMEA104567498
BioProject:
PRJEB22252
Submitter:
SC
Date:
2019/07/08
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_902160095.1 (latest)
RefSeq assembly accession:
GCF_902160095.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABGMK01
Genome coverage:
80x

IDs: 3799471 [UID] 12030328 [GenBank] 15520468 [RefSeq]

See Genome Information for Enterobacter kobei

There are 602 assemblies for this organism

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History (Show revision history)

Comment

The organism was changed from 'Enterobacter cloacae' to 'Enterobacter kobei' in April 2020.

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##
This Genome (query)::GCA_902160095.1
Current Name::Enterobacter kobei
Previous Name::Enterobacter cloacae
Date Updated::2020-04-20
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_001729765.1
A1 Name::Enterobacter kobei
A1 ANI::99.09%
A1 Query Coverage::89.01%
A1 Subject Coverage::88.1%
Analysis 2 (A2)::Query vs. TYPE genome for previous name
A2 Genome (subject)::GCA_000755525.1
A2 Name::Enterobacter cloacae
A2 ANI::88.44%
A2 Query Coverage::82.14%
A2 Subject Coverage::72.16%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length4,878,323
Total ungapped length4,877,171
Gaps between scaffolds0
Number of scaffolds78
Scaffold N50228,707
Scaffold L509
Number of contigs82
Contig N50228,707
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)78

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,878,323784,877,171228,70740

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter kobeiEnterobacter kobei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001729765.1Enterobacter kobeitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001729765.1Enterobacter kobeitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0889.0188.10
Best-match type99.0889.0188.10

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna