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25426_7#23

Organism name:
Enterococcus gallinarum (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: 4928STDY7071322
BioSample:
SAMEA104567432
BioProject:
PRJEB22252
Submitter:
SC
Date:
2019/07/08
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • annotation fails completeness check
GenBank assembly accession:
GCA_902159065.1 (latest)
RefSeq assembly accession:
GCF_902159065.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CABGIE01
Genome coverage:
95x

IDs: 3794321 [UID] 12020078 [GenBank] 12303168 [RefSeq]

See Genome Information for Enterococcus gallinarum

Pathogen Detection Resources

There are 177 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,546,096
Total ungapped length3,545,751
Gaps between scaffolds0
Number of scaffolds45
Scaffold N50244,193
Scaffold L506
Number of contigs48
Contig N50244,193
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)45

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,546,096453,545,751244,19330

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterococcus gallinarumEnterococcus gallinarum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900447935.1Enterococcus gallinarumsuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_030441895.1Enterococcus entomosociumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type82.9014.8813.42
Best-match type98.3887.7877.31

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchcoverage is less than 80%