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SRS476270_33

Organism name:
uncultured Clostridium sp. (firmicutes)
Taxonomy check:
OK
Isolate:
HGM11640
BioSample:
SAMEA5278194
BioProject:
PRJEB31003
Submitter:
DOE JGI
Date:
2020/06/25
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_900769625.1 (latest)
RefSeq assembly accession:
GCF_900769625.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CAAGHK01
Genome coverage:
19x

IDs: 7304541 [UID] 20181188 [GenBank] 44896628 [RefSeq]

See Genome Information for uncultured Clostridium sp.

Pathogen Detection Resources

There are 2040 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,104,477
Total ungapped length3,104,477
Number of contigs106
Contig N5059,708
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)106

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,104,4771063,104,47759,70800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
uncultured Clostridium sp.uncultured Clostridium sp.

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000409755.1Clostridium butyricumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.9940.3927.28

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna