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Nitrosocaldus cavascurensis SCU2 chromosome

Organism name:
Candidatus Nitrosocaldus cavascurensis (archaea)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: SCU2
BioSample:
SAMEA104466896
BioProject:
PRJEB24312
Submitter:
UNIVERSITY OF VIENNA
Date:
2018/01/31
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_900248165.1 (latest)
RefSeq assembly accession:
GCF_900248165.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
40x

IDs: 1553671 [UID] 5987738 [GenBank] 13506738 [RefSeq]

See Genome Information for Candidatus Nitrosocaldus cavascurensis

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_900248165.1-RS_2024_03_28
Annotation Date::03/28/2024 03:10:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,723
CDSs (total)::1,674
Genes (coding)::1,673
CDSs (with protein)::1,673
Genes (RNA)::49
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::44
ncRNAs::2
Pseudo Genes (total)::1
CDSs (without protein)::1
Pseudo Genes (ambiguous residues)::0 of 1
Pseudo Genes (frameshifted)::0 of 1
Pseudo Genes (incomplete)::1 of 1
Pseudo Genes (internal stop)::0 of 1
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,577,284
Total ungapped length1,577,284
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_900248164.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome NCAVLT981265.1=NZ_LT981265.1

Assembly statistics

MoleculeTotal
Length
Chromosome NCAV1,577,284

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Nitrosocaldus cavascurensisCandidatus Nitrosocaldus cavascurensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013538805.1Candidatus Nitrosocaldus schleperaesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.1478.1584.76

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna