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ASM3623552v1

Organism name:
Streptococcus anginosus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: UMB4081
BioSample:
SAMN39507684
BioProject:
PRJNA316969
Submitter:
Loyola University Chicago
Date:
2024/01/28
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • from large multi-isolate project
GenBank assembly accession:
GCA_036235525.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAZAWZ01
Assembly method:
SPAdes v. 3.15.4
Expected final version:
yes
Genome coverage:
205.716x
Sequencing technology:
Illumina NextSeq

IDs: 21162851 [UID] 53267308 [GenBank]

See Genome Information for Streptococcus anginosus

There are 347 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/23/2024 11:22:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,971
CDSs (total)::1,934
Genes (coding)::1,797
CDSs (with protein)::1,797
Genes (RNA)::37
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::31
ncRNAs::3
Pseudo Genes (total)::137
CDSs (without protein)::137
Pseudo Genes (ambiguous residues)::0 of 137
Pseudo Genes (frameshifted)::70 of 137
Pseudo Genes (incomplete)::60 of 137
Pseudo Genes (internal stop)::53 of 137
Pseudo Genes (multiple problems)::39 of 137
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,919,980
Total ungapped length1,919,980
Number of contigs41
Contig N50107,952
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)41

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,919,980411,919,980107,95200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus anginosusStreptococcus anginosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000373605.1Streptococcus anginosus SK52 = DSM 20563type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000373605.1Streptococcus anginosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type95.4180.7280.06
Best-match type95.4180.7280.06

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna